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Mapping the brain: probes with tiny LEDs shed light on neural pathways

The new probes can control and record the activity of many individual neurons, and are believed to be the smallest implantable LEDs ever made. | Medium Read

ANN ARBOR—With the help of light-emitting diodes as small as neurons, University of Michigan researchers are unlocking the secrets of neural pathways in the brain.

The researchers have built and tested in mice neural probes that hold what are believed to be the smallest implantable LEDs ever made. The new probes can control and record the activity of many individual neurons, measuring how changes in the activity of a single neuron can affect its neighbors.

The team anticipates that experiments using probes based on their design could lead to breakthroughs in understanding and treating neurological diseases such as Alzheimer’s.

“This is a very big step forward,” said Kensall Wise, the William Gould Dow Distinguished University Professor Emeritus, who was involved with the research. “The fact that you can generate these optical signals on the probe, in a living brain, opens up new doors.”

A network of around 100 billion neurons power the human brain, and figuring out how they work together is a monumental and important task, the researchers say.

“Hundreds of millions of people suffer from neurological diseases, but treatment methods and drugs are currently very limited because scientific understanding of the brain is lacking,” said Fan Wu, a postdoctoral researcher in electrical engineering and computer sciences and co-first author on a new paper on the findings published in Neuron. “We have developed a tool that is needed to better understand how the brain works—and why it doesn’t work—to try to solve to these problems.”

In genetically modified rodents, neurons can be turned on and off with light. Typically, neuroscientists using this “optogenetics” technique shine light on a region of the brain through implanted optical fibers and record the response with a second device. This helps to reveal which regions of the brain are responsible for which behaviors. But it can’t reveal how the neurons communicate with one another.

Enlargeneural probes
IMAGE:  Neural probes developed at the University of Michigan are helping researchers understand the brain's circuitry. The tines of the probe are just under a tenth of a millimeter wide. Equipped with minuscule LED lights and electrodes, each tine can stimulate and measure about a hundred individual neurons. Image credit: Fan Wu

The new probes can. Each probe array contains 12 LEDs and 32 electrodes. The micro LEDs are as small as a neuron’s cell body, so they can turn single neurons on and off. Meanwhile, the microelectrodes measure activity at the single-neuron level, reporting how a change in one neuron’s behavior affects the surrounding network.

“Now we can know how a group of cells, both adjacent and farther away, are responding to the activation of a single cell,” Wu said. “This will help us better understand how these cells are communicating with each other.”

While the probes were made at U-M, the experiments to demonstrate them took place at New York University in the lab of György Buzsáki, a leader in experimental neuroscience. Eran Stark, who is currently an assistant professor of neuroscience at Tel Aviv University, used them to measure how signals pass through the brains of mice. He focused on the area of the brain responsible for short- and long-term memory.

“Using micro-LED probes, we may tease out how the signals propagate inside the neural circuitry so that we can understand how memories are formed, retrieved and replaced,” said Euisik Yoon, a professor of electrical engineering and computer science at U-M and project leader.

The proof-of-concept experiment found that superficial and deep neurons in the hippocampus produce different kinds of brain waves when stimulated. Future experiments will explore how these waves are related to memory.

The research is described in the paper, “Monolithically Integrated μLEDs on Silicon Neural Probes for High-Resolution Optogenetic Studies in Behaving Animals.” It is available online now, and will be the cover story of the Dec. 16 edition of Neuron.

The research was funded by the National Institute of Biomedical Imaging and Bioengineering (EB019221), the National Institute of Neurological Disorders and Stroke (NS075015), and the National Institute of Mental Health (MH54671), all at NIH, and by the National Science Foundation (ECCS 1407977). Funding also was provided by the Rothschild Foundation, the Human Frontiers in Science Program and the Machiah Foundation.

Pei-Cheng Ku, an associate professor of electrical engineering and computer science at U-M, helped develop the micro-LEDs. Yoon is also a professor of biomedical engineering. Wise is a professor emeritus of electrical engineering and computer science and of biomedical engineering.


More information


Monolithically Integrated μLEDs on Silicon Neural Probes for High-Resolution Optogenetic Studies in Behaving Animals, Fan Wu, Eran Stark, Pei-Cheng Ku, Kensall D. Wise, György Buzsáki, Euisik Yoon


Euisik Yoon – Professor of EECS and Biomedical Engineering, Director of Lurie Nanofabrication Facility
Fan Wu – Research fellow in Prof. Yoon’s group
Pei-Cheng Ku – Associate Professor of EECS
Kensall Wise – William Gould Dow Distinguished University Professor Emeritus, EECS
Eran Stark – Assistant Professor of neuroscience at Tel Aviv University
György Buzsáki – Biggs Professor of Neuroscience at New York University School of Medicine

Project Brief

Recording and stimulating multiple individual neurons is critical for local circuit analysis. Wu et al. fabricated neuron-size μLEDs directly on silicon shanks integrated with recording sites, controlling distinct cells and field oscillations in freely moving mice with unprecedented spatial resolution.

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